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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11327693_11327954_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11327693 - 11327954
Intron Length:
262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGGGGAGT
5'SS Class:
major
3'SS Sequence:
GAGCCGCTCGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
CTCTCATTATCA
Flanking Amino Acid:
MERRLLDVRLG
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.1
60.4
45.8
Major BPS
78.3
0.7
1
80
32.1
Major PPT
58.9
0.2
1
50.2
38.9
Minor 5ss
26.7
-2.7
3.3
30.3
43.2
Minor BPS
55.9
0.18
1.9
68.18
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014261
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014856
11327689 - 11328897
1209