About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11328051_11328235_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11328051 - 11328235
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GCGTTTTTATTC
Flanking Amino Acid:
PRGLLGGVQKAWNGYCNKYI
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.4
0.73
0.8
77.7
30.9
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
49.3
-0
1.5
53.51
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014261
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014856
11327689 - 11328897
1209