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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11331505_11331734_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11331505 - 11331734
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
TCGTGTGTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CTTGTCTCCACT
Flanking Amino Acid:
PWYDRGFCRNGPSCKYKHRR
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
62.8
37.8
Major BPS
71.2
0.53
1
61
37.5
Major PPT
65.2
0.34
1.1
60.9
44.7
Minor 5ss
25.5
-2.8
3.4
34
41.8
Minor BPS
48.5
-0
2.1
71.07
46.1

Associated Gene:

Gene:
CPSF4L
Ensembl Gene ID:
ENSAPLG00000022954
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019312
11331407 - 11332714
1308