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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11331505_11332095_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11331505 - 11332095
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCGTGTGTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CTTGTCTCCACT
Flanking Amino Acid:
RPECYFHNKFGPSCKYKHRR
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
65.2
0.34
1.1
60.9
44.7
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
48.5
-0
2.1
71.07
46.1

Associated Gene:

Gene:
CPSF4L
Ensembl Gene ID:
ENSAPLG00000022954
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028666
11330219 - 11332714
2496