Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11331834_11332095_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11331834 - 11332095

Intron Length:

262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CTTGATCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTGAT

U12 Branch Point Sequence:

CCCCCCTTGATC

Flanking Amino Acid:

RPECYFHNKFGECSIKDCPF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

71.1

32.7

Major BPS

71.5

0.53

1.1

43.2

Major PPT

72.3

0.5

0.9

65.1

36.1

Minor 5ss

28.6

-2.4

32.8

35.9

Minor BPS

58.8

0.26

1.3

58.5

41.4

Associated Gene:

Gene:

CPSF4L

Ensembl Gene ID:

ENSAPLG00000022954

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019312

11331407 - 11332714

1308