About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11332563_11332606_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11332563 - 11332606
Intron Length:
44

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGGAC
5'SS Class:
major
3'SS Sequence:
GGGGGGCTGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGGACAG
U12 Branch Point Sequence:
CCTGGGGTAGCC
Flanking Amino Acid:
PLPFLGTCSEGCRKGKETPI
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
63.5
37
Major BPS
34.5
-0.9
1.5
32.2
43.7
Major PPT
48.9
-0
1.2
38.8
44.6
Minor 5ss
22.7
-3.1
3.5
30.5
43.7
Minor BPS
31.1
-1.4
2.7
40.7
45.9

Associated Gene:

Gene:
CPSF4L
Ensembl Gene ID:
ENSAPLG00000022954
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019312
11331407 - 11332714
1308