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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11413224_11413797_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11413224 - 11413797
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCTCGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTTTTTTACT
Flanking Amino Acid:
MSLDSYIWDLENPNKPQLVL
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69.6
36.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
67.8
0.4
0.9
65.3
30.5
Minor 5ss
29
-2.4
3.5
38
46.9
Minor BPS
74
0.84
1.5
91.27
31.8

Associated Gene:

Gene:
DNAI2
Ensembl Gene ID:
ENSAPLG00000007193
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007473
11411180 - 11417547
6368