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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11413912_11414997_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11413912 - 11414997
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGAAG
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CAGATTTTGACG
Flanking Amino Acid:
LVGGCYNGQLAYWDTRKGGL
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
65.6
41.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
91.3
0.93
0.6
88.1
21.7
Minor 5ss
25.7
-2.8
2.9
22.3
37.3
Minor BPS
48.7
-0.2
1.4
46.73
40.8

Associated Gene:

Gene:
DNAI2
Ensembl Gene ID:
ENSAPLG00000007193
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007473
11411180 - 11417547
6368