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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11415368_11415734_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11415368 - 11415734
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATCC
5'SS Class:
major
3'SS Sequence:
CTCCCACCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CTCCTCCCACCC
Flanking Amino Acid:
AITLEFEPTMPTKFMVGTEQ
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
67.4
32.1
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
69.7
0.44
0.8
65.9
28.9
Minor 5ss
33.9
-1.8
3
40.1
39.9
Minor BPS
40
-0.7
2
47.95
41.8

Associated Gene:

Gene:
DNAI2
Ensembl Gene ID:
ENSAPLG00000007193
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040015
11411180 - 11417547
6368
ENSAPLT00000007473
11411180 - 11417547
6368
ENSAPLT00000045369
11413798 - 11417547
3750
ENSAPLT00000044565
11413798 - 11417447
3650