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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11415959_11416192_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11415959 - 11416192
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGGC
5'SS Class:
major
3'SS Sequence:
GGGTCCCCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGGCAC
U12 Branch Point Sequence:
GGGTCCCCATCA
Flanking Amino Acid:
EAKESSIMWTKYHLSYLTAG
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.1
67.1
38.1
Major BPS
43
-0.4
1.5
48.8
46.3
Major PPT
60.2
0.23
1
56.4
40
Minor 5ss
33.4
-1.9
3.5
42.8
39
Minor BPS
43.9
-0.4
2.1
54.38
43.6

Associated Gene:

Gene:
DNAI2
Ensembl Gene ID:
ENSAPLG00000007193
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044565
11413798 - 11417447
3650
ENSAPLT00000040015
11411180 - 11417547
6368
ENSAPLT00000007473
11411180 - 11417547
6368
ENSAPLT00000045369
11413798 - 11417547
3750