About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11417144_11417256_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11417144 - 11417256
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGCA
5'SS Class:
major
3'SS Sequence:
CTGTGCCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGGGAT
U12 Branch Point Sequence:
TGCCATGGGATG
Flanking Amino Acid:
RAEARHLDGKVKKRAGEEAV
Intron Amino Acid Position:
574

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
57.8
41.5
Major BPS
49
-0
1.5
48.8
46.3
Major PPT
77.5
0.62
0.9
73.4
37.1
Minor 5ss
34
-1.8
3.7
47.9
47.7
Minor BPS
34
-1.4
1.9
33.72
33.8

Associated Gene:

Gene:
DNAI2
Ensembl Gene ID:
ENSAPLG00000007193
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045369
11413798 - 11417547
3750
ENSAPLT00000044565
11413798 - 11417447
3650
ENSAPLT00000040015
11411180 - 11417547
6368
ENSAPLT00000007473
11411180 - 11417547
6368