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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11417353_11417441_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11417353 - 11417441
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCGGAC
U12 Branch Point Sequence:
AGCCCCCGGACC
Flanking Amino Acid:
EESEEKDAAKE*
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
42.7
-0.4
1.2
34.3
33.1
Major PPT
72.1
0.5
0.8
64.9
30.8
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
44.9
-0.4
1.8
52.42
38.2

Associated Gene:

Gene:
DNAI2
Ensembl Gene ID:
ENSAPLG00000007193
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044565
11413798 - 11417447
3650