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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11420269_11420768_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11420269 - 11420768
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCGCC
5'SS Class:
major
3'SS Sequence:
CGCTCCGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAC
U12 Branch Point Sequence:
GGGACAGCAATG
Flanking Amino Acid:
ETAALFEKFIRYLYCGGVSI
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.9
37
Major BPS
66.1
0.4
1.2
69.1
37.9
Major PPT
63.5
0.31
0.9
53.5
36.6
Minor 5ss
38.2
-1.3
3.2
50.4
46.4
Minor BPS
35.6
-1.2
2.1
35.3
39.3

Associated Gene:

Gene:
BTBD17
Ensembl Gene ID:
ENSAPLG00000021504
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027727
11419188 - 11422215
3028