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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11421046_11422121_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11421046 - 11422121
Intron Length:
1076

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CACCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
ACTCTCCCACCT
Flanking Amino Acid:
FLLLLLTVQAAQRAELGGDA
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
69.6
41.1
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
68.4
0.41
0.8
61.6
28.5
Minor 5ss
33
-1.9
3.7
43.3
45.4
Minor BPS
42.6
-0.4
2
60.43
43

Associated Gene:

Gene:
BTBD17
Ensembl Gene ID:
ENSAPLG00000021504
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027727
11419188 - 11422215
3028