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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11428079_11428521_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11428079 - 11428521
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGCACC
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CCCGTTTTCACC
Flanking Amino Acid:
KAFSMDEPSFAKKPVSPYSG
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
61
44
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
89
0.88
0.6
84.1
23.9
Minor 5ss
39.7
-1.2
3.1
53.4
43.7
Minor BPS
45.3
-0.3
1.8
47.92
43.1

Associated Gene:

Gene:
GPRC5C
Ensembl Gene ID:
ENSAPLG00000030162
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020972
11419023 - 11430145
11123