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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11428611_11428778_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11428611 - 11428778
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACCCAT
U12 Branch Point Sequence:
GGTGCCCCCACG
Flanking Amino Acid:
QPTEMALMHKSEGPYDMILP
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
48.7
-0
1.4
58.4
40.3
Major PPT
75.3
0.57
0.7
69.5
24.3
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
39.9
-0.9
2.3
46.07
45.8

Associated Gene:

Gene:
GPRC5C
Ensembl Gene ID:
ENSAPLG00000030162
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020972
11419023 - 11430145
11123