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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11432341_11432593_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11432341 - 11432593
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGAGCA
5'SS Class:
major
3'SS Sequence:
CACGGCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAC
U12 Branch Point Sequence:
GGCTCATCACAC
Flanking Amino Acid:
AAPQKSRRKKEFQKKKLDKA
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1
58.5
34.5
Major BPS
65.7
0.39
1.1
67.9
37.7
Major PPT
60.9
0.25
0.9
49.9
39
Minor 5ss
26.5
-2.7
3.2
27.2
37.2
Minor BPS
40.6
-0.7
2
46.97
41.4

Associated Gene:

Gene:
CCDC137
Ensembl Gene ID:
ENSAPLG00000030624
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033262
11431803 - 11433815
2013