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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11441691_11441778_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11441691 - 11441778
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTTAA
5'SS Class:
major
3'SS Sequence:
GTTCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
GACTCGGTGATT
Flanking Amino Acid:
LRSYRDWESNPYFNCSAPGV
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.4
1.3
67.6
35.8
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
75.7
0.58
0.8
69.7
31
Minor 5ss
35.9
-1.6
2.9
44.6
43.6
Minor BPS
42.5
-0.5
2.5
60.01
44

Associated Gene:

Gene:
TSPAN10
Ensembl Gene ID:
ENSAPLG00000029948
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037103
11441268 - 11443775
2508