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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11536736_11537835_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11536736 - 11537835
Intron Length:
1100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCTGC
5'SS Class:
major
3'SS Sequence:
TGTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
GCCTCCTAACCT
Flanking Amino Acid:
MLVETSMIGLMLGTC
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
64.1
43.4
Major BPS
72
0.55
1
71.8
31.4
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
49.7
-0
2.6
68.4
42.6
Minor BPS
50.9
0.11
2
67.9
48.7

Associated Gene:

Gene:
SLC38A10
Ensembl Gene ID:
ENSAPLG00000005199
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033781
11536690 - 11567352
30663
ENSAPLT00000005372
11536690 - 11567352
30663