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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11539102_11540791_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11539102 - 11540791
Intron Length:
1690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGGGTATC
5'SS Class:
major
3'SS Sequence:
CTTTCGGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAA
U12 Branch Point Sequence:
TGGATCTTAACC
Flanking Amino Acid:
LIFYTVFMFVIVLSSFKHGL
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
74
36.6
Major BPS
73.4
0.58
0.9
63.7
35.1
Major PPT
75.9
0.58
0.9
69.2
36.9
Minor 5ss
33.6
-1.9
3.1
41.6
39.5
Minor BPS
69.7
0.6
1.3
71.59
39.4

Associated Gene:

Gene:
SLC38A10
Ensembl Gene ID:
ENSAPLG00000005199
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033781
11536690 - 11567352
30663
ENSAPLT00000028652
11536631 - 11567352
30722
ENSAPLT00000005372
11536690 - 11567352
30663