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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11540917_11543815_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11540917 - 11543815
Intron Length:
2899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CCCTTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
GTTTCCTCAAAT
Flanking Amino Acid:
PIFGMSFACQSQVLPTYDSL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
71.5
38.5
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
84.3
0.77
0.7
78.9
26.8
Minor 5ss
38.5
-1.3
2.7
48
34.4
Minor BPS
71.3
0.75
1.6
87.05
37.8

Associated Gene:

Gene:
SLC38A10
Ensembl Gene ID:
ENSAPLG00000005199
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033781
11536690 - 11567352
30663
ENSAPLT00000028652
11536631 - 11567352
30722
ENSAPLT00000005372
11536690 - 11567352
30663