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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11555969_11561309_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11555969 - 11561309
Intron Length:
5341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCGTCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAC
U12 Branch Point Sequence:
GCGCGATTAACC
Flanking Amino Acid:
RMEQDPVKMPEQNPAVEEAE
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.5
35.8
Major BPS
64.1
0.35
1.2
67.6
36.5
Major PPT
70.7
0.47
0.8
63.7
31.4
Minor 5ss
32.9
-2
3.3
44.7
43.3
Minor BPS
46.4
-0.3
2
53.7
43.6

Associated Gene:

Gene:
SLC38A10
Ensembl Gene ID:
ENSAPLG00000005199
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033781
11536690 - 11567352
30663
ENSAPLT00000028652
11536631 - 11567352
30722
ENSAPLT00000005372
11536690 - 11567352
30663