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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11561481_11561743_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11561481 - 11561743
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTTAT
U12 Branch Point Sequence:
CCCCCCCTAACC
Flanking Amino Acid:
EKVQLDRPDQGIALPVGEAH
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
63.6
0.34
1.4
57.4
49.1
Major PPT
65.2
0.34
0.9
57.2
38.6
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
53.5
0.09
1.8
60.5
44.7

Associated Gene:

Gene:
SLC38A10
Ensembl Gene ID:
ENSAPLG00000005199
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033781
11536690 - 11567352
30663
ENSAPLT00000028652
11536631 - 11567352
30722
ENSAPLT00000005372
11536690 - 11567352
30663