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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11579860_11580148_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11579860 - 11580148
Intron Length:
289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTCCC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTGGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCTCACTCAGCT
Flanking Amino Acid:
LGRLLAARREERQRQTEEGN
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.2
61.8
43
Major BPS
72.7
0.56
1
75
30.1
Major PPT
83.8
0.76
0.9
81.4
30.6
Minor 5ss
30.5
-2.2
2.9
37.1
40.1
Minor BPS
48.7
-0
2
71.18
45.1

Associated Gene:

Gene:
CEP131
Ensembl Gene ID:
ENSAPLG00000012961
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019347
11577663 - 11588558
10896