About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11582295_11582780_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11582295 - 11582780
Intron Length:
486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTGGC
5'SS Class:
major
3'SS Sequence:
TGGCACCCACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAG
U12 Branch Point Sequence:
GTTTCCGTATTC
Flanking Amino Acid:
RAISLLQTALAQQRELTVRH
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
59.5
39.2
Major BPS
68.2
0.45
1.5
77.7
37.1
Major PPT
58.3
0.19
1
48.7
40.2
Minor 5ss
26.3
-2.7
3.2
31.1
38
Minor BPS
52.7
0.06
2.2
70.84
40.9

Associated Gene:

Gene:
CEP131
Ensembl Gene ID:
ENSAPLG00000012961
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019347
11577663 - 11588558
10896
ENSAPLT00000013508
11577663 - 11588558
10896