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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11584948_11585443_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11584948 - 11585443
Intron Length:
496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAG
U12 Branch Point Sequence:
CCGGGCTGAGCT
Flanking Amino Acid:
KEECERAAENRIKRIRDKYE
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
44.5
-0.3
1.6
55.8
41.7
Major PPT
81.4
0.71
0.7
73.1
31.8
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
40.8
-0.6
2.1
51.87
48.6

Associated Gene:

Gene:
CEP131
Ensembl Gene ID:
ENSAPLG00000012961
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019347
11577663 - 11588558
10896
ENSAPLT00000013508
11577663 - 11588558
10896