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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11585890_11586847_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11585890 - 11586847
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCCTGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CCCTCTCCATCC
Flanking Amino Acid:
KDRELEEVHRRVKTAVARKE
Intron Amino Acid Position:
842

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
69.9
0.45
0.9
68.1
32
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
40.9
-0.7
2
46.36
43.1

Associated Gene:

Gene:
CEP131
Ensembl Gene ID:
ENSAPLG00000012961
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013508
11577663 - 11588558
10896
ENSAPLT00000019347
11577663 - 11588558
10896