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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11590465_11590543_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11590465 - 11590543
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCATCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
CCTGCTTCATCC
Flanking Amino Acid:
AAIDAHHLVFRVNGAITAGF
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
79.1
0.66
0.8
69.8
36.3
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
45.8
-0.3
1.9
53.5
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012946
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013468
11586238 - 11591694
5457