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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11590683_11590792_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11590683 - 11590792
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGAG
5'SS Class:
major
3'SS Sequence:
TCCCCTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TCCCCTGTAACA
Flanking Amino Acid:
DGFKHPPRSPETRYVFLPDH
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
60.4
40.3
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
69.2
0.43
0.9
64.4
35.3
Minor 5ss
23.6
-3
3.3
29
43.5
Minor BPS
51.6
0.05
2
63.93
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012946
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013468
11586238 - 11591694
5457