About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11595105_11604207_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11595105 - 11604207
Intron Length:
9103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
ATCTCCTGACCC
Flanking Amino Acid:
SLAFSSHFDPDGTPLSELSW
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
72
0.5
0.8
65.4
30.4
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
58.9
0.26
1.8
69.62
41.7

Associated Gene:

Gene:
AATK
Ensembl Gene ID:
ENSAPLG00000030122
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033346
11595026 - 11613685
18660