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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11603150_11604207_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11603150 - 11604207
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
ATCTCCTGACCC
Flanking Amino Acid:
SPVGVQKALLDGTPLSELSW
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74
38.4
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
72
0.5
0.8
65.4
30.4
Minor 5ss
30
-2.3
2.9
32.9
41.9
Minor BPS
58.9
0.26
1.8
69.62
41.7

Associated Gene:

Gene:
AATK
Ensembl Gene ID:
ENSAPLG00000030122
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030846
11602027 - 11613685
11659