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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11604342_11605207_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11604342 - 11605207
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CGCCCCGGCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTGTGT
U12 Branch Point Sequence:
TCCCCCTCCCCT
Flanking Amino Acid:
CCKKGDIGFKEFENAEGDDY
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
22.4
-1.7
4.1
43.1
49.2
Major PPT
54.8
0.11
1
45
36.4
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
35.8
-1
3.5
61.08
48.3

Associated Gene:

Gene:
AATK
Ensembl Gene ID:
ENSAPLG00000030122
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033346
11595026 - 11613685
18660
ENSAPLT00000030846
11602027 - 11613685
11659