About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11605019_11605207_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11605019 - 11605207
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGGGG
5'SS Class:
major
3'SS Sequence:
CGCCCCGGCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTGTGT
U12 Branch Point Sequence:
TCCCCCTCCCCT
Flanking Amino Acid:
SRALDGCHHQEFENAEGDDY
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
53.3
43.7
Major BPS
22.4
-1.7
4.1
43.1
49.2
Major PPT
54.8
0.11
1
45
36.4
Minor 5ss
34.8
-1.7
3.5
46.9
48.5
Minor BPS
35.8
-1
3.5
61.08
48.3

Associated Gene:

Gene:
AATK
Ensembl Gene ID:
ENSAPLG00000030122
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023939
11604797 - 11613475
8679