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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11605350_11606223_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11605350 - 11606223
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCGA
5'SS Class:
strong_major
3'SS Sequence:
TGCCCCTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGGAT
U12 Branch Point Sequence:
TGCCCCTTTACA
Flanking Amino Acid:
LPMAKQPGRSVQLLKSADLG
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
68.9
43.8
Major BPS
46.5
-0.2
1.5
45
47.8
Major PPT
78.6
0.64
0.8
71.7
32.8
Minor 5ss
37.2
-1.4
3
48
47.5
Minor BPS
63
0.4
1.7
70.06
41.6

Associated Gene:

Gene:
AATK
Ensembl Gene ID:
ENSAPLG00000030122
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033346
11595026 - 11613685
18660
ENSAPLT00000030846
11602027 - 11613685
11659
ENSAPLT00000023939
11604797 - 11613475
8679