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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11606712_11607160_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11606712 - 11607160
Intron Length:
449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
CTGCCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAT
U12 Branch Point Sequence:
GCGGTGCCAATG
Flanking Amino Acid:
MQFLEEAQPYRALQHTNLLQ
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
56.7
0.17
1.4
64.7
41
Major PPT
71.6
0.49
0.8
65.1
30.5
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
31.6
-1.5
2.1
27.69
36

Associated Gene:

Gene:
AATK
Ensembl Gene ID:
ENSAPLG00000030122
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033346
11595026 - 11613685
18660
ENSAPLT00000030846
11602027 - 11613685
11659
ENSAPLT00000023939
11604797 - 11613475
8679