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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11607249_11607445_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11607249 - 11607445
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CACCGCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTGAC
U12 Branch Point Sequence:
ACCGCCCCACAG
Flanking Amino Acid:
YLLVMEFCPLGDLKGYLRSC
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
45.4
-0.2
1.4
34.5
43.7
Major PPT
61.9
0.27
0.9
53.2
30.8
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
34.1
-1.3
1.9
31.5
40.7

Associated Gene:

Gene:
AATK
Ensembl Gene ID:
ENSAPLG00000030122
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030846
11602027 - 11613685
11659
ENSAPLT00000023939
11604797 - 11613475
8679
ENSAPLT00000033346
11595026 - 11613685
18660