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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11607580_11608236_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11607580 - 11608236
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGC
5'SS Class:
major
3'SS Sequence:
GTTTGCTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
GGGGTGGTGACA
Flanking Amino Acid:
LHLHRNNYIHSDLALRNCLL
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
64.1
43.4
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
73.6
0.53
1
69.4
41.7
Minor 5ss
42.8
-0.8
3.2
58.8
46.1
Minor BPS
36.2
-1
2.4
42.37
39.5

Associated Gene:

Gene:
AATK
Ensembl Gene ID:
ENSAPLG00000030122
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030846
11602027 - 11613685
11659
ENSAPLT00000023939
11604797 - 11613475
8679
ENSAPLT00000033346
11595026 - 11613685
18660