About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11609036_11609220_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11609036 - 11609220
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
GCTGTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGCAT
U12 Branch Point Sequence:
GTGTGCTCAGCA
Flanking Amino Acid:
IVDQTKASNVWSLGVTIWEL
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
50.7
0.02
1.5
62
44.2
Major PPT
65.7
0.35
1
57.9
38.5
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
46.4
-0.2
2.2
60.46
45.2

Associated Gene:

Gene:
AATK
Ensembl Gene ID:
ENSAPLG00000030122
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033346
11595026 - 11613685
18660
ENSAPLT00000030846
11602027 - 11613685
11659
ENSAPLT00000023939
11604797 - 11613475
8679