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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11612681_11612785_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11612681 - 11612785
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAC
U12 Branch Point Sequence:
TTGCCACCAGCA
Flanking Amino Acid:
DDVTIYLFDQESPTRELGEQ
Intron Amino Acid Position:
1385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
52.3
0.06
1.4
64.2
43
Major PPT
79.8
0.67
0.7
72.1
32.4
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
40.3
-0.7
2.1
55.74
42.5

Associated Gene:

Gene:
AATK
Ensembl Gene ID:
ENSAPLG00000030122
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023939
11604797 - 11613475
8679
ENSAPLT00000033346
11595026 - 11613685
18660
ENSAPLT00000030846
11602027 - 11613685
11659