Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11650149_11651755_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11650149 - 11651755

Intron Length:

1607

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTGATGCTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTTTTTTGATG

Flanking Amino Acid:

MGKTYEKALASMTYAAKGYF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.4

26.8

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

68.8

0.42

0.9

66.2

40.6

Minor 5ss

33.7

-1.9

3.2

40.3

40.1

Minor BPS

70.1

0.49

1.2

73.17

33.7

Associated Gene:

Gene:

BAIAP2

Ensembl Gene ID:

ENSAPLG00000012542

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033561

11649541 - 11654619

5079

ENSAPLT00000030280

11623075 - 11654491

31417

ENSAPLT00000013079

11617335 - 11654619

37285