About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11679054_11680531_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11679054 - 11680531
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCTGTATT
5'SS Class:
major
3'SS Sequence:
GCTCTTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTATGTTTATCC
Flanking Amino Acid:
ISCLAFHPHWPHLAVGSNDY
Intron Amino Acid Position:
1221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.3
74.4
41.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
77.5
0.62
0.8
71.8
32.8
Minor 5ss
42.7
-0.8
2.6
52.1
44.5
Minor BPS
49.8
-0
2
63.66
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011777
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012356
11676462 - 11784807
108346
ENSAPLT00000038032
11676462 - 11784807
108346
ENSAPLT00000034967
11676462 - 11784807
108346