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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11680662_11681233_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11680662 - 11681233
Intron Length:
572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CATTCCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GTTCTCTTCATT
Flanking Amino Acid:
DIHPQANLFACGSMNQFTAI
Intron Amino Acid Position:
1177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
77.6
31.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
82.1
0.72
0.8
73.2
36.8
Minor 5ss
41.6
-0.9
2.7
51
39.8
Minor BPS
59.8
0.39
1.7
77.64
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011777
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038032
11676462 - 11784807
108346
ENSAPLT00000034967
11676462 - 11784807
108346
ENSAPLT00000012356
11676462 - 11784807
108346