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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11684282_11684359_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11684282 - 11684359
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTACC
5'SS Class:
major
3'SS Sequence:
GCTTGTTTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
CTTCCCTTCACA
Flanking Amino Acid:
VFDRRMALSECRVMTYREHT
Intron Amino Acid Position:
1109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
71.5
38.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
77.1
0.61
0.9
68.5
42.1
Minor 5ss
42.7
-0.8
2.6
52.7
38.2
Minor BPS
67.2
0.54
1.8
76.69
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011777
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038032
11676462 - 11784807
108346
ENSAPLT00000034967
11676462 - 11784807
108346
ENSAPLT00000012356
11676462 - 11784807
108346