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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11707548_11708779_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11707548 - 11708779
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTCA
5'SS Class:
major
3'SS Sequence:
TTTCCATTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AATCCTTTTACT
Flanking Amino Acid:
TNKGMHIHQVGGSPPTTSTS
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.6
39.2
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
82.5
0.73
0.7
77.9
29.6
Minor 5ss
43.7
-0.7
2.8
48.7
47
Minor BPS
62.7
0.48
1.6
77.1
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011777
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034967
11676462 - 11784807
108346
ENSAPLT00000012356
11676462 - 11784807
108346
ENSAPLT00000038032
11676462 - 11784807
108346