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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11708884_11714340_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11708884 - 11714340
Intron Length:
5457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
CTGTTCACAACC
Flanking Amino Acid:
MKVLNSIAYKATVNARPQRI
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68
42.9
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
88.4
0.86
0.6
82.3
29.8
Minor 5ss
46.6
-0.3
2.8
66.1
45
Minor BPS
49.6
-0
1.9
62.98
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011777
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012356
11676462 - 11784807
108346