Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11721830_11723224_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11721830 - 11723224

Intron Length:

1395

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTGGG

5'SS Class:

major

3'SS Sequence:

TTTGCATCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

AATTGCTAAATT

Flanking Amino Acid:

NYPLPSPAATEGGSLTPVRD

Intron Amino Acid Position:

592

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.2

60.9

43.8

Major BPS

84.4

0.85

1.1

34.5

Major PPT

76.2

0.59

0.9

70.3

35.3

Minor 5ss

34.5

-1.8

2.9

41.3

45.1

Minor BPS

55.3

0.24

2.1

75.28

41.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034967

11676462 - 11784807

108346

ENSAPLT00000012356

11676462 - 11784807

108346

ENSAPLT00000038032

11676462 - 11784807

108346