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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11731022_11731662_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11731022 - 11731662
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATTGCATTGATT
Flanking Amino Acid:
VIVNNYNTGQEACLQGNLIA
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
76.6
0.6
0.9
74
41
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
60
0.4
1.7
78.39
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011777
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038032
11676462 - 11784807
108346
ENSAPLT00000034967
11676462 - 11784807
108346
ENSAPLT00000012356
11676462 - 11784807
108346