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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11732434_11737762_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11732434 - 11737762
Intron Length:
5329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCTCGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTCCTTTGTCT
Flanking Amino Acid:
IWAKILAVDSSCQADLVKDN
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
73.5
37
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
86.2
0.81
0.8
83.9
31.1
Minor 5ss
34.9
-1.7
2.8
44.7
42.7
Minor BPS
48.2
-0
3.5
84.49
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011777
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038032
11676462 - 11784807
108346
ENSAPLT00000034967
11676462 - 11784807
108346
ENSAPLT00000012356
11676462 - 11784807
108346