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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11737874_11739384_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11737874 - 11739384
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGCGTTTG
5'SS Class:
major
3'SS Sequence:
TCTGGCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
GGTTTCTGAGGG
Flanking Amino Acid:
LDLGPWAVSLALSVGIFPYV
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
67.7
39.9
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
72
0.5
0.9
65.4
36.2
Minor 5ss
37.4
-1.4
3.1
45.6
44.9
Minor BPS
44.4
-0.5
2
49.55
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011777
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038032
11676462 - 11784807
108346
ENSAPLT00000034967
11676462 - 11784807
108346
ENSAPLT00000012356
11676462 - 11784807
108346