Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_11742560_11745243_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11742560 - 11745243

Intron Length:

2684

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTTAC

5'SS Class:

strong_major

3'SS Sequence:

CTTGCTTTAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

CTTGCTTTAACA

Flanking Amino Acid:

TIIEEGTAFRHSPFFAEQLT

Intron Amino Acid Position:

296

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

78.4

32.4

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

77.3

0.61

0.9

72.9

36.2

Minor 5ss

40.1

-1.1

2.8

44.3

43.6

Minor BPS

74.5

0.77

1.4

78.6

38.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011777

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038032

11676462 - 11784807

108346

ENSAPLT00000034967

11676462 - 11784807

108346

ENSAPLT00000012356

11676462 - 11784807

108346